Dark energy is one of the deepest puzzles in modern cosmology, and mounting evidence suggests that it is not just a cosmological constant but a genuinely dynamical component. Although cosmology and dynamical systems theory emerged from different disciplines, dynamical systems methods have become essential tools to uncover the qualitative evolution of the universe. The equations governing homogeneous and isotropic cosmologies can be naturally written as systems of ordinary differential equations, making them an ideal arena for dynamical system analysis. This review begins with a sharp, streamlined introduction to the standard dynamical systems toolkit widely used in cosmology. We then move on to alternative formulations based on polar and hyperbolic variable transformations. These approaches unlock powerful new ways to probe a broad spectrum of scalar field dark energy models, to set and constrain initial conditions, and to analyze tracking behavior across wide classes of potentials. The review is self-contained, but consistently directs the reader to more specialized and in-depth treatments where needed.